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Schmidt, F., Dahlmann, B., Hustoft, H. K., Koehler, C. J., Strozynski, M., Kloss, A., Zimny-Arndt, U., Jungblut, P. R. and Thiede, B. Quantitative proteome analysis of the 20S proteasome of apoptotic Jurkat T cells. Amino Acids. 2011. 41, 351-361. [PubMed] |
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Tian, R., Wang, S., Elisma, F., Li, L., Zhou, H., Wang, L. and Figeys, D. Rare cell proteomic reactor applied to stable isotope labeling by amino acids in cell culture (SILAC)-based quantitative proteomics study of human embryonic stem cell differentiation. Molecular & Cellular Proteomics : MCP. 2011. 10, M110.000679. [PubMed] |
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Cuomo, A., Moretti, S., Minucci, S. and Bonaldi, T. SILAC-based proteomic analysis to dissect the "histone modification signature" of human breast cancer cells. Amino Acids. 2011. 41, 387-399. [PubMed] |
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Akude, E., Zherebitskaya, E., Chowdhury, S. K., Smith, D. R., Dobrowsky, R. T. and Fernyhough, P. Diminished superoxide generation is associated with respiratory chain dysfunction and changes in the mitochondrial proteome of sensory neurons from diabetic rats. Diabetes. 2011. 60, 288-297. [PubMed] |
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Sotoca, A. M., Gelpke, M. D., Boeren, S., Strom, A., Gustafsson, J. A., Murk, A. J., Rietjens, I. M. and Vervoort, J. Quantitative proteomics and transcriptomics addressing the estrogen receptor subtype-mediated effects in T47D breast cancer cells exposed to the phytoestrogen genistein. Molecular & Cellular Proteomics : MCP. 2011. 10, M110.002170. [PubMed] |
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Khositseth, S., Pisitkun, T., Slentz, D. H., Wang, G., Hoffert, J. D., Knepper, M. A. and Yu, M. J. Quantitative protein and mRNA profiling shows selective post-transcriptional control of protein expression by vasopressin in kidney cells. Molecular & Cellular Proteomics : MCP. 2011. 10, M110.004036. [PubMed] |
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Walther, D. M. and Mann, M. Accurate quantification of more than 4000 mouse tissue proteins reveals minimal proteome changes during aging. Molecular & Cellular Proteomics : MCP. 2011. 10, M110.004523. [PubMed] |
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Plasman, K., Van, D., Kaiserman, D., Impens, F., Demeyer, K., Helsens, K., Goethals, M., Bird, P. I., Vandekerckhove, J. and Gevaert, K. Probing the efficiency of proteolytic events by positional proteomics. Molecular & Cellular Proteomics : MCP. 2011. 10, M110.003301. [PubMed] |
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Hong, D., Chen, H. X., Yu, H. Q., Wang, C., Deng, H. T., Lian, Q. Q. and Ge, R. S. Quantitative proteomic analysis of dexamethasone-induced effects on osteoblast differentiation, proliferation, and apoptosis in MC3T3-E1 cells using SILAC. Osteoporosis International : A Journal Established As Result of Cooperation Between the European Foundation For Osteoporosis and the National Osteoporosis. 2011. 22, 2175-2186. [PubMed] |
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Ge, F., Zhang, L., Tao, S. C., Kitazato, K., Zhang, Z. P., Zhang, X. E. and Bi, L. J. Quantitative proteomic analysis of tumor reversion in multiple myeloma cells. Journal of Proteome Research. 2011. 10, 845-855. [PubMed] |
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Zhong, J., Chaerkady, R., Kandasamy, K., Gucek, M., Cole, R. N. and Pandey, A. The interactome of a PTB domain-containing adapter protein, Odin, revealed by SILAC. Journal of Proteomics. 2011. 74, 294-303. [PubMed] |
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Brockmeyer, C., Paster, W., Pepper, D., Tan, C. P., Trudgian, D. C., McGowan, S., Fu, G., Gascoigne, N. R., Acuto, O. and Salek, M. T cell receptor (TCR)-induced tyrosine phosphorylation dynamics identifies THEMIS as a new TCR signalosome component. The Journal of Biological Chemistry. 2011. 286, 7535-7547. [PubMed] |
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Wilde, I. B., Brack, M., Winget, J. M. and Mayor, T. Proteomic characterization of aggregating proteins after the inhibition of the ubiquitin proteasome system. Journal of Proteome Research. 2011. 10, 1062-1072. [PubMed] |
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Liu, H., Ong, S. E., Badu-Nkansah, K., Schindler, J., White, F. M. and Hynes, R. O. CUB-domain-containing protein 1 (CDCP1) activates Src to promote melanoma metastasis. Proceedings of the National Academy of Sciences of the United States of America. 2011. 108, 1379-1384. [PubMed] |
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Gunawardena, H. P., Huang, Y., Kenjale, R., Wang, H., Xie, L. and Chen, X. Unambiguous characterization of site-specific phosphorylation of leucine-rich repeat Fli-I-interacting protein 2 (LRRFIP2) in Toll-like receptor 4 (TLR4)-mediated signaling. The Journal of Biological Chemistry. 2011. 286, 10897-10910. [PubMed] |
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Lossner, C., Warnken, U., Pscherer, A. and Schnolzer, M. Preventing arginine-to-proline conversion in a cell-line-independent manner during cell cultivation under stable isotope labeling by amino acids in cell culture (SILAC) conditions. Analytical Biochemistry. 2011. 412, 123-125. [PubMed] |
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Basu, S. S., Mesaros, C., Gelhaus, S. L. and Blair, I. A. Stable isotope labeling by essential nutrients in cell culture for preparation of labeled coenzyme A and its thioesters. Analytical Chemistry. 2011. 83, 1363-1369. [PubMed] |
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Yan, G. R., Xu, S. H., Tan, Z. L., Liu, L. and He, Q. Y. Global identification of miR-373-regulated genes in breast cancer by quantitative proteomics. Proteomics. 2011. 11, 912-920. [PubMed] |
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Tsai, B. P., Wang, X., Huang, L. and Waterman, M. L. Quantitative profiling of in vivo-assembled RNA-protein complexes using a novel integrated proteomic approach. Molecular & Cellular Proteomics : MCP. 2011. 10, M110.007385. [PubMed] |
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Quan, H., Peng, X., Liu, S., Bo, F., Yang, L., Huang, Z., Li, H., Chen, X. and Di, W. Differentially expressed protein profile of renal tubule cell stimulated by elevated uric acid using SILAC coupled to LC-MS. Cellular Physiology and Biochemistry : International Journal of Experimental Cellular Physiology, Biochemistry, and Pharmacology. 2011. 27, 91-98. [PubMed] |
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Denis, N., Palmer-Smith, H., Elisma, F., Busuttil, A., Wright, T. G., Bou, K., Prat, A., Seidah, N. G., Chretien, M., Mayne, J. and Figeys, D. Quantitative proteomic analysis of PCSK9 gain of function in human hepatic HuH7 cells. Journal of Proteome Research. 2011. 10, 2011-2026. [PubMed] |
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Hart, J. R., Liao, L., Ueno, L., Yates, J. R. and Vogt, P. K. Protein expression profiles of C3H 10T1/2 murine fibroblasts and of isogenic cells transformed by the H1047R mutant of phosphoinositide 3-kinase (PI3K). Cell Cycle. 2011. 10, 971-976. [PubMed] |
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Zhang, G., Deinhardt, K., Chao, M. V. and Neubert, T. A. Study of neurotrophin-3 signaling in primary cultured neurons using multiplex stable isotope labeling with amino acids in cell culture. Journal of Proteome Research. 2011. 10, 2546-2554. [PubMed] |
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Marcilla, M., Alpizar, A., Paradela, A. and Albar, J. P. A systematic approach to assess amino acid conversions in SILAC experiments. Talanta. 2011. 84, 430-436. [PubMed] |
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Jakobsen, L., Vanselow, K., Skogs, M., Toyoda, Y., Lundberg, E., Poser, I., Falkenby, L. G., Bennetzen, M., Westendorf, J., Nigg, E. A., Uhlen, M., Hyman, A. A. and Andersen, J. S. Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods. The EMBO Journal. 2011. 30, 1520-1535. [PubMed] |
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Gunaratne, J., Goh, M. X., Swa, H. L., Lee, F. Y., Sanford, E., Wong, L. M., Hogue, K. A., Blackstock, W. P. and Okumura, K. Protein interactions of phosphatase and tensin homologue (PTEN) and its cancer-associated G20E mutant compared by using stable isotope labeling by amino acids in cell culture-based parallel affinity purification. The Journal of Biological Chemistry. 2011. 286, 18093-18103. [PubMed] |
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Kubota, T., Hiraga, S., Yamada, K., Lamond, A. I. and Donaldson, A. D. Quantitative proteomic analysis of chromatin reveals that Ctf18 acts in the DNA replication checkpoint. Molecular & Cellular Proteomics : MCP. 2011. 10, M110.005561. [PubMed] |
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Kelstrup, C. D., Hekmat, O., Francavilla, C. and Olsen, J. V. Pinpointing phosphorylation sites: Quantitative filtering and a novel site-specific x-ion fragment. Journal of Proteome Research. 2011. 10, 2937-2948. [PubMed] |
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Ebner, O. A. and Selbach, M. Whole cell proteome regulation by microRNAs captured in a pulsed SILAC mass spectrometry approach. Methods in Molecular Biology. 2011. 725, 315-331. [PubMed] |
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Guerrera, I. C., Ollero, M., Vieu, D. L. and Edelman, A. Quantitative differential proteomics of cystic fibrosis cell models by SILAC (stable isotope labelling in cell culture). Methods in Molecular Biology. 2011. 742, 213-225. [PubMed] |
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Gu, T. L., Nardone, J., Wang, Y., Loriaux, M., Villen, J., Beausoleil, S., Tucker, M., Kornhauser, J., Ren, J., MacNeill, J., Gygi, S. P., Druker, B. J., Heinrich, M. C., Rush, J. and Polakiewicz, R. D. Survey of activated FLT3 signaling in leukemia. PloS One. 2011. 6, e19169. [PubMed] |
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Yu, J. L. and Guo, L. Quantitative proteomic analysis of Salmonella enterica serovar Typhimurium under PhoP/PhoQ activation conditions. Journal of Proteome Research. 2011. 10, 2992-3002. [PubMed] |
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Auweter, S. D., Bhavsar, A. P., de, H., Li, Y., Chan, Y. A., van, d. e. r., Lowden, M. J., Coombes, B. K., Rogers, L. D., Stoynov, N., Foster, L. J. and Finlay, B. B. Quantitative mass spectrometry catalogues Salmonella pathogenicity island-2 effectors and identifies their cognate host binding partners. The Journal of Biological Chemistry. 2011. 286, 24023-24035. [PubMed] |
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Kaller, M., Liffers, S. T., Oeljeklaus, S., Kuhlmann, K., Roh, S., Hoffmann, R., Warscheid, B. and Hermeking, H. Genome-wide characterization of miR-34a induced changes in protein and mRNA expression by a combined pulsed SILAC and microarray analysis. Molecular & Cellular Proteomics : MCP. 2011. 10, M111.010462. [PubMed] |
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Formolo, C. A., Williams, R., Gordish-Dressman, H., MacDonald, T. J., Lee, N. H. and Hathout, Y. Secretome signature of invasive glioblastoma multiforme. Journal of Proteome Research. 2011. 10, 3149-3159. [PubMed] |
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Agyeman, A. S., Chaerkady, R., Shaw, P. G., Davidson, N. E., Visvanathan, K., Pandey, A. and Kensler, T. W. Transcriptomic and proteomic profiling of KEAP1 disrupted and sulforaphane-treated human breast epithelial cells reveals common expression profiles. Breast Cancer Research and Treatment. 2011. [PubMed] |
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Thomas, S. N., Wan, Y., Liao, Z., Hanson, P. I. and Yang, A. J. Stable isotope labeling with amino acids in cell culture based mass spectrometry approach to detect transient protein interactions using substrate trapping. Analytical Chemistry. 2011. 83, 5511-5518. [PubMed] |
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Chavez, J. D., Hoopmann, M. R., Weisbrod, C. R., Takara, K. and Bruce, J. E. Quantitative proteomic and interaction network analysis of cisplatin resistance in HeLa cells. PloS One. 2011. 6, e19892. [PubMed] |
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Westman, B. J. and Lamond, A. I. A role for SUMOylation in snoRNP biogenesis revealed by quantitative proteomics. Nucleus. 2011. 2, 30-37. [PubMed] |
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Calamia, V., Rocha, B., Mateos, J., Fernandez-Puente, P., Ruiz-Romero, C. and Blanco, F. J. Metabolic labeling of chondrocytes for the quantitative analysis of the interleukin-1-beta-mediated modulation of their intracellular and extracellular proteomes. Journal of Proteome Research. 2011. 10, 3701-3711. [PubMed] |
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Kantardjieff, A., Jacob, N. M., Yee, J. C., Epstein, E., Kok, Y. J., Philp, R., Betenbaugh, M. and Hu, W. S. Transcriptome and proteome analysis of Chinese hamster ovary cells under low temperature and butyrate treatment. Journal of Biotechnology. 2010. 145, 143-159. [PubMed] |
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Lam, Y. W., Evans, V. C., Heesom, K. J., Lamond, A. I. and Matthews, D. A. Proteomics analysis of the nucleolus in adenovirus-infected cells. Molecular & Cellular Proteomics : MCP. 2010. 9, 117-130. [PubMed] |
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Zhang, L., Yu, C., Vasquez, F. E., Galeva, N., Onyango, I., Swerdlow, R. H. and Dobrowsky, R. T. Hyperglycemia alters the schwann cell mitochondrial proteome and decreases coupled respiration in the absence of superoxide production. Journal of Proteome Research. 2010. 9, 458-471. [PubMed] |
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Zee, B. M., Levin, R. S., Xu, B., LeRoy, G., Wingreen, N. S. and Garcia, B. A. In vivo residue-specific histone methylation dynamics. The Journal of Biological Chemistry. 2010. 285, 3341-3350. [PubMed] |
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Hsu, W. L. and Sung, T. Y. Automated generic analysis tools for protein quantitation using stable isotope labeling. Methods in Molecular Biology. 2010. 604, 257-272. [PubMed] |
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Boulon, S., Ahmad, Y., Trinkle-Mulcahy, L., Verheggen, C., Cobley, A., Gregor, P., Bertrand, E., Whitehorn, M. and Lamond, A. I. Establishment of a protein frequency library and its application in the reliable identification of specific protein interaction partners. Molecular & Cellular Proteomics : MCP. 2010. 9, 861-879. [PubMed] |
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Li, M., Aliotta, J. M., Asara, J. M., Wu, Q., Dooner, M. S., Tucker, L. D., Wells, A., Quesenberry, P. J. and Ramratnam, B. Intercellular transfer of proteins as identified by stable isotope labeling of amino acids in cell culture. The Journal of Biological Chemistry. 2010. 285, 6285-6297. [PubMed] |
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Deng, W., de, H., Yu, H. B., Li, Y., Croxen, M. A., Thomas, N. A., Puente, J. L., Foster, L. J. and Finlay, B. B. A comprehensive proteomic analysis of the type III secretome of Citrobacter rodentium. The Journal of Biological Chemistry. 2010. 285, 6790-6800. [PubMed] |
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Seyfried, N. T., Gozal, Y. M., Dammer, E. B., Xia, Q., Duong, D. M., Cheng, D., Lah, J. J., Levey, A. I. and Peng, J. Multiplex SILAC analysis of a cellular TDP-43 proteinopathy model reveals protein inclusions associated with SUMOylation and diverse polyubiquitin chains. Molecular & Cellular Proteomics : MCP. 2010. 9, 705-718. [PubMed] |
| 50. |
Zhou, Q., Chaerkady, R., Shaw, P. G., Kensler, T. W., Pandey, A. and Davidson, N. E. Screening for therapeutic targets of vorinostat by SILAC-based proteomic analysis in human breast cancer cells. Proteomics. 2010. 10, 1029-1039. [PubMed] |
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Xiong, L. and Wang, Y. Quantitative proteomic analysis reveals the perturbation of multiple cellular pathways in HL-60 cells induced by arsenite treatment. Journal of Proteome Research. 2010. 9, 1129-1137. [PubMed] |
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McGeer, E. G. and McGeer, P. L. Neuroinflammation in Alzheimer's disease and mild cognitive impairment: a field in its infancy. Journal of Alzheimer's Disease : JAD. 2010. 19, 355-361. [PubMed] |
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Parker, S. J., Halligan, B. D. and Greene, A. S. Quantitative analysis of SILAC data sets using spectral counting. Proteomics. 2010. 10, 1408-1415. [PubMed] |
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Polacek, M., Bruun, J. A., Johansen, O. and Martinez, I. Differences in the secretome of cartilage explants and cultured chondrocytes unveiled by SILAC technology. Journal of Orthopaedic Research : Official Publication of the Orthopaedic Research Society. 2010. 28, 1040-1049. [PubMed] |
| 55. |
Rinschen, M. M., Yu, M. J., Wang, G., Boja, E. S., Hoffert, J. D., Pisitkun, T. and Knepper, M. A. Quantitative phosphoproteomic analysis reveals vasopressin V2-receptor-dependent signaling pathways in renal collecting duct cells. Proceedings of the National Academy of Sciences of the United States of America. 2010. 107, 3882-3887. [PubMed] |
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Looso, M., Borchardt, T., Kruger, M. and Braun, T. Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry. Molecular & Cellular Proteomics : MCP. 2010. 9, 1157-1166. [PubMed] |
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Du, R., Long, J., Yao, J., Dong, Y., Yang, X., Tang, S., Zuo, S., He, Y. and Chen, X. Subcellular quantitative proteomics reveals multiple pathway cross-talk that coordinates specific signaling and transcriptional regulation for the early host response to LPS. Journal of Proteome Research. 2010. 9, 1805-1821. [PubMed] |
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Lee, J. H., Kim, B. G., Ahn, J. M., Park, H. J., Park, S. K., Yoo, J. S., Yates, J. R. and Cho, J. Y. Role of PI3K on the regulation of BMP2-induced beta-Catenin activation in human bone marrow stem cells. Bone. 2010. 46, 1522-1532. [PubMed] |
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Kaake, R. M., Milenkovic, T., Przulj, N., Kaiser, P. and Huang, L. Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy. Journal of Proteome Research. 2010. 9, 2016-2029. [PubMed] |
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Agard, N. J., Maltby, D. and Wells, J. A. Inflammatory stimuli regulate caspase substrate profiles. Molecular & Cellular Proteomics : MCP. 2010. 9, 880-893. [PubMed] |
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Imami, K., Sugiyama, N., Tomita, M. and Ishihama, Y. Quantitative proteome and phosphoproteome analyses of cultured cells based on SILAC labeling without requirement of serum dialysis. Molecular BioSystems. 2010. 6, 594-602. [PubMed] |
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Jayapal, K. P., Sui, S., Philp, R. J., Kok, Y. J., Yap, M. G., Griffin, T. J. and Hu, W. S. Multitagging proteomic strategy to estimate protein turnover rates in dynamic systems. Journal of Proteome Research. 2010. 9, 2087-2097. [PubMed] |
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Collier, T. S., Sarkar, P., Rao, B. and Muddiman, D. C. Quantitative top-down proteomics of SILAC labeled human embryonic stem cells. Journal of the American Society For Mass Spectrometry. 2010. 21, 879-889. [PubMed] |
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An, E., Sen, S., Park, S. K., Gordish-Dressman, H. and Hathout, Y. Identification of novel substrates for the serine protease HTRA1 in the human RPE secretome. Investigative Ophthalmology & Visual Science. 2010. 51, 3379-3386. [PubMed] |
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Hammond, D. E., Hyde, R., Kratchmarova, I., Beynon, R. J., Blagoev, B. and Clague, M. J. Quantitative analysis of HGF and EGF-dependent phosphotyrosine signaling networks. Journal of Proteome Research. 2010. 9, 2734-2742. [PubMed] |
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Sharma, K., Kumar, C., Keri, G., Breitkopf, S. B., Oppermann, F. S. and Daub, H. Quantitative analysis of kinase-proximal signaling in lipopolysaccharide-induced innate immune response. Journal of Proteome Research. 2010. 9, 2539-2549. [PubMed] |
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Cunningham, D. L., Sweet, S. M., Cooper, H. J. and Heath, J. K. Differential phosphoproteomics of fibroblast growth factor signaling: identification of Src family kinase-mediated phosphorylation events. Journal of Proteome Research. 2010. 9, 2317-2328. [PubMed] |
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Skiba, M., Glowinski, F., Koczan, D., Mettenleiter, T. C. and Karger, A. Gene expression profiling of Pseudorabies virus (PrV) infected bovine cells by combination of transcript analysis and quantitative proteomic techniques. Veterinary Microbiology. 2010. 143, 14-20. [PubMed] |
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Greco, T. M., Seeholzer, S. H., Mak, A., Spruce, L. and Ischiropoulos, H. Quantitative mass spectrometry-based proteomics reveals the dynamic range of primary mouse astrocyte protein secretion. Journal of Proteome Research. 2010. 9, 2764-2774. [PubMed] |
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Liu, J., Shi, M., Hong, Z., Zhang, J., Bradner, J., Quinn, T., Beyer, R. P., Mcgeer, P. L., Chen, S. and Zhang, J. Identification of ciliary neurotrophic factor receptor alpha as a mediator of neurotoxicity induced by alpha-synuclein. Proteomics. 2010. 10, 2138-2150. [PubMed] |
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Duan, X., Kelsen, S. G., Clarkson, A. B., Ji, R. and Merali, S. SILAC analysis of oxidative stress-mediated proteins in human pneumocytes: new role for treacle. Proteomics. 2010. 10, 2165-2174. [PubMed] |
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Shen, G., Liang, S., Xu, Z., Zhou, L., Xiao, S., Xia, X., Li, R., Liao, Y., You, C. and Wei, Y. Downregulated expression of HSP27 in human low-grade glioma tissues discovered by a quantitative proteomic analysis. Proteome Science. 2010. 8, 17. [PubMed] |
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Christensen, G. L., Kelstrup, C. D., Lyngso, C., Sarwar, U., Bogebo, R., Sheikh, S. P., Gammeltoft, S., Olsen, J. V. and Hansen, J. L. Quantitative phosphoproteomics dissection of seven-transmembrane receptor signaling using full and biased agonists. Molecular & Cellular Proteomics : MCP. 2010. 9, 1540-1553. [PubMed] |
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Geiger, T., Cox, J., Ostasiewicz, P., Wisniewski, J. R. and Mann, M. Super-SILAC mix for quantitative proteomics of human tumor tissue. Nature Methods. 2010. 7, 383-385. [PubMed] |
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Zhou, X., Han, P., Li, J., Zhang, X., Huang, B., Ruan, H. Q. and Chen, C. ESNOQ, proteomic quantification of endogenous S-nitrosation. PloS One. 2010. 5, e10015. [PubMed] |
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Zhang, L., Zhang, Z. P., Zhang, X. E., Lin, F. S. and Ge, F. Quantitative proteomics analysis reveals BAG3 as a potential target to suppress severe acute respiratory syndrome coronavirus replication. Journal of Virology. 2010. 84, 6050-6059. [PubMed] |
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Ren, F., Wu, H., Lei, Y., Zhang, H., Liu, R., Zhao, Y., Chen, X., Zeng, D., Tong, A., Chen, L., Wei, Y. and Huang, C. Quantitative proteomics identification of phosphoglycerate mutase 1 as a novel therapeutic target in hepatocellular carcinoma. Molecular Cancer. 2010. 9, 81. [PubMed] |
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Xu, B. J., Yan, W., Jovanovic, B., An, A. Q., Cheng, N., Aakre, M. E., Yi, Y., Eng, J., Link, A. J. and Moses, H. L. Quantitative analysis of the secretome of TGF-beta signaling-deficient mammary fibroblasts. Proteomics. 2010. 10, 2458-2470. [PubMed] |
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Yang, W., Cai, Q., Lui, V. W., Everley, P. A., Kim, J., Bhola, N., Quesnelle, K. M., Zetter, B. R., Steen, H., Freeman, M. R. and Grandis, J. R. Quantitative proteomics analysis reveals molecular networks regulated by epidermal growth factor receptor level in head and neck cancer. Journal of Proteome Research. 2010. 9, 3073-3082. [PubMed] |
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Dilworth, D. J., Saleem, R. A., Rogers, R. S., Mirzaei, H., Boyle, J. and Aitchison, J. D. QTIPS: a novel method of unsupervised determination of isotopic amino acid distribution in SILAC experiments. Journal of the American Society For Mass Spectrometry. 2010. 21, 1417-1422. [PubMed] |
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Imamura, H., Yachie, N., Saito, R., Ishihama, Y. and Tomita, M. Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data. BMC Bioinformatics. 2010. 11, 232. [PubMed] |
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Bicho, C. C., de, L., Chen, Z. A., Rappsilber, J. and Sawin, K. E. A genetic engineering solution to the "arginine conversion problem" in stable isotope labeling by amino acids in cell culture (SILAC). Molecular & Cellular Proteomics : MCP. 2010. 9, 1567-1577. [PubMed] |
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Hah, N., Kolkman, A., Ruhl, D. D., Pijnappel, W. W., Heck, A. J., Timmers, H. T. and Kraus, W. L. A role for BAF57 in cell cycle-dependent transcriptional regulation by the SWI/SNF chromatin remodeling complex. Cancer Research. 2010. 70, 4402-4411. [PubMed] |
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Emmott, E., Rodgers, M. A., Macdonald, A., McCrory, S., Ajuh, P. and Hiscox, J. A. Quantitative proteomics using stable isotope labeling with amino acids in cell culture reveals changes in the cytoplasmic, nuclear, and nucleolar proteomes in Vero cells infected with the coronavirus infectious bronchitis virus. Molecular & Cellular Proteomics : MCP. 2010. 9, 1920-1936. [PubMed] |
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Ostasiewicz, P., Zielinska, D. F., Mann, M. and Wisniewski, J. R. Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry. Journal of Proteome Research. 2010. 9, 3688-3700. [PubMed] |
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Soufi, B., Kumar, C., Gnad, F., Mann, M., Mijakovic, I. and Macek, B. Stable isotope labeling by amino acids in cell culture (SILAC) applied to quantitative proteomics of Bacillus subtilis. Journal of Proteome Research. 2010. 9, 3638-3646. [PubMed] |
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Spruijt, C. G., Bartels, S. J., Brinkman, A. B., Tjeertes, J. V., Poser, I., Stunnenberg, H. G. and Vermeulen, M. CDK2AP1/DOC-1 is a bona fide subunit of the Mi-2/NuRD complex. Molecular BioSystems. 2010. 6, 1700-1706. [PubMed] |
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Sury, M. D., Chen, J. X. and Selbach, M. The SILAC fly allows for accurate protein quantification in vivo. Molecular & Cellular Proteomics : MCP. 2010. 9, 2173-2183. [PubMed] |
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Yee, J. C., Jacob, N. M., Jayapal, K. P., Kok, Y. J., Philp, R., Griffin, T. J. and Hu, W. S. Global assessment of protein turnover in recombinant antibody producing myeloma cells. Journal of Biotechnology. 2010. 148, 182-193. [PubMed] |
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Li, J., Liu, R., Lei, Y., Wang, K., Lau, Q. C., Xie, N., Zhou, S., Nie, C., Chen, L., Wei, Y. and Huang, C. Proteomic analysis revealed association of aberrant ROS signaling with suberoylanilide hydroxamic acid-induced autophagy in Jurkat T-leukemia cells. Autophagy. 2010. 6, 711-724. [PubMed] |
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Yang, Y., Chaerkady, R., Kandasamy, K., Huang, T. C., Selvan, L. D., Dwivedi, S. B., Kent, O. A., Mendell, J. T. and Pandey, A. Identifying targets of miR-143 using a SILAC-based proteomic approach. Molecular BioSystems. 2010. 6, 1873-1882. [PubMed] |
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